EJ Donovan, A Agrawal, N Liberman, JI Kalai, AJ Adler, AM Lamper, HQ Wang, NJ Chua, EF Koslover, and EL Barnhart. “Dendrite architecture determines mitochondrial distribution patterns in vivo ”, Cell Reports, 43(5), (2024)
CC Crapart, ZC Scott, T Konno, A Sharma, P Parutto, DMD Bailey, LM Westrate, E Avezov, and EF Koslover. “Luminal transport through intact endoplasmic reticulum limits the magnitude of localized Ca2+ signals ”, Proc Nat Acad Sci, 121(13), e2312172121 (2024)
ZC Scott, K Koning, M Vanderwerp, L Cohen, LM Westrate, EF Koslover. “ER network heterogeneity guides diffusive transport and kinetics ” Biophys J, 122 (2023)
Z Yang, EF Koslover. “Diffusive exit rates through pores in membrane-enclosed structures ”, Phys Biol, 20(2), 026001 (2023)
SE Cason, SS Mogre, EF Koslover, ELF Holzbaur. “Neuronal Autophagy by the Numbers ”, Autophagy Reports, 2(1), (2023)
SE Cason, SS Mogre, ELF Holzbaur, EF Koslover. “Spatiotemporal analysis of axonal autophagosome–lysosome dynamics reveals limited fusion events and slow maturation ”, Molecular Biology of the Cell 33 (13), ar123 (2022)
XG Arceo, EF Koslover, BM Zid, AI Brown. “Mitochondrial mRNA localization is governed by translation kinetics and spatial transport ”, PLoS Comp Biol 18 (8), e1010413 (2022)
Y Sun, Z Yu, CJ Obara, K Mittal, J Lippincott-Schwartz, and EF Koslover. “Unraveling trajectories of diffusive particles on networks ” in Phys Rev Res 4.2, 023182 (2022)
A Agrawal, ZC Scott, and EF Koslover. "Morphology and Transport in Eukaryotic Cells ” in Ann Rev Biophys, 51 (2022)
SS Mogre, JM Christensen, SL Reck-Peterson, and EF Koslover. ``Optimizing microtubule arrangements for rapid cargo capture. " in Biophys J, 120.22, 4918-4931 (2021)
A Agrawal and EF Koslover. “Optimizing mitochondrial maintenance in extended neuronal projections. ” in PLoS Comp Biol 17.6: e1009073 (2021)
ZC Scott, AI Brown, SS Mogre, LM Westrate, and EF Koslover. “Diffusive search and trajectories on tubular networks: a propagator approach. ” in Eur Phys J E, 44(6), 1-20 (2021)
SS Lou, AS Kennard, EF Koslover, E Gutierrez, A Groisman, and JA Theriot “Elastic wrinkling of keratocyte lamellipodia driven by myosin-induced contractile stress ”, in Biophys J 120(9), 1578-1591 (2021)
AI Brown, and EF Koslover “Design principles for the glycoprotein quality control pathway ”, in PLoS Comp Biol 17.2, e1008654 (2021)
SS Mogre, AI Brown, and EF Koslover “Getting around the cell: physical transport in the intracellular world. ”, in Phys Biol 17.6, 061003 (2020)
Errata: It has recently come to our attention that the published version of this review article contains two mistakes: a mislabeling of Eq. 9 and a typo in Eq. 13. We link here a corrected version of the article with the corrections marked.
MP Viana, AI Brown, IA Mueller, C Goul, EF Koslover, and SM Rafelski "Mitochondrial Fission and Fusion Dynamics Generate Efficient, Robust, and Evenly Distributed Network Topologies in Budding Yeast Cells ", in Cell Systems, 10.3: 287-297 (2020)
SS Mogre, JR Christensen, CS Niman, SL Reck-Peterson, and EF Koslover "Hitching a Ride: Mechanics of Transport Initiation through Linker-Mediated Hitchhiking ", in Biophys. J., 118.6: 1357-1369 (2020)
AI Brown, LM Westrate, and EF Koslover "Impact of global structure on diffusive exploration of organelle networks ", in Scientific Reports, 10.1: 4984 (2020)
AM Lorenzo, EM De La Cruz, and EF Koslover "Thermal fracture kinetics of heterogeneous semiflexible polymer ", in Soft Matter, 16.8: 2017-2024 (2020)
Z Chen, R Gabizon, AI Brown, A Lee, A Song, C Diaz-Celis, CD Kaplan, EF Koslover, T Yao, C Bustamante “High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier ”, in ELife, 8: e48281 (2019)
FE Ortega, EF Koslover, and JA Theriot “ Listeria monocytogenes cell-to-cell spread in epithelia is heterogeneous and dominated by rare pioneer bacteria. ”, in ELife, 8: e40032 (2019)
A Agrawal, G Pekkurnaz, and EF Koslover “ Spatial control of neuronal metabolism through glucose-mediated mitochondrial transport regulation ”, in ELife, 7: e40986 (2018)
SS Mogre and EF Koslover “Multimodal transport and dispersion of organelles in narrow tubular cells
”, in Phys. Rev. E, 97.4: 042402
(2018)
EF Koslover, CK Chan, and JA Theriot, “Cytoplasmic Flow and Mixing Due to Deformation of Motile Cells ”, in Biophys. J., 113(9), 2077-2087
(2017)
EF Koslover, MA Diaz de la Rosa, and AJ Spakowitz, “Crowding and hopping in a protein's diffusive
transport on DNA ” in J. Phys. A: Math. Theor. , 50(7),
074005 (2017)
EF Koslover, CK Chan, and JA Theriot, “Disentangling Random Motion and Flow in a
Complex Medium ”, in Biophys. J., 110(3), 700-709
(2016)
X Zhou, DK Halladin, ER Rojas, EF Koslover, TK Lee, KC Huang,
and JA Theriot, “Mechanical crack propagation drives millisecond
daughter cell separation in Staphylococcus aureus ”, in
Science, 348(6234), 574-578 (2015)
P. J. Mulligan, EF Koslover and AJ Spakowitz “Thermodynamic model of heterochromatin formation
through epigenetic regulation ”, in J. Phys.:Condens. Matter,
27(6), 064109 (2015)
EF Koslover and AJ Spakowitz, "Multi-scale dynamics of semiflexible polymers
from a universal coarse-graining procedure ", in Phys. Rev. E,
90(1), 013304 (2014)
D. K. Breslow, EF Koslover, F Seydel, AJ Spakowitz, and MV
Nachury, “An in vitro assay for entry into cilia reveals unique properties of the soluble diffusion barrier ”, J. Cell Biol., 203(1), 129-147 (2013)
F. Ye, D. K. Breslow, EF Koslover, AJ Spakowitz, WJ Nelson, MV
Nachury, “Single molecule imaging reveals a major role for diffusion in the exploration
of ciliary space by signaling receptors ”, in eLife , 2
(2013)
EF Koslover and AJ Spakowitz, “Discretizing elastic chains for
coarse-grained polymer models ”, in Soft Matter, 9(29), 7016-7027
(2013)
EF Koslover and AJ Spakowitz, “Systematic coarse-graining of
microscale polymer models as effective elastic chains ”, in
Macromolecules (2013)
EF Koslover and AJ Spakowitz, “Force fluctuations impact
kinetics of biomolecular systems ” in Phys. Rev. E., 86(1), 011906
(2012)
EF Koslover, MA Diaz de la Rosa, and AJ Spakowitz, “
Theoretical
and computational modeling of target-site search kinetics in vitro
and in vivo ” in Biophys. J., 101(4), 856-865 (2011)
B Sudhanshu, S Mihardja, EF Koslover, S Mehraeen, C Bustamante,
and AJ Spakowitz, “Tension - dependent structural deformation
alters single-molecule transition kinetics ”, in Proc. Nat.
Acad. Sci., 108(5), 1885-1890 (2011)
EF Koslover, CJ Fuller, AF Straight, and AJ Spakowitz, “Local
Geometry and Elasticity in Compact Chromatin Structure ” in
Biophys. J., 99(12), 3941-3950 (2010)
MA D ́ıaz de la Rosa, EF Koslover, PJ Mulligan, and AJ
Spakowitz, “Dynamic Strategies for Target-Site Search by
DNA-Binding Proteins ” in Biophys. J., 98(12), 2943-2953 (2010)
MS Bauer, B Strodel, SN Fejer, EF Koslover and DJ Wales,
“Interpolation schemes for peptide
rearrangements ” in J. Chem.
Phys., 132, 054101 (2010)
EF Koslover, and AJ Spakowitz, “Twist-and Tension-Mediated
Elastic Coupling between DNA-Binding Proteins ” Phys. Rev. Lett.,
17, 178102 (2009)
S Mehraeen, B Sudhanshu, EF Koslover, AJ Spakowitz, “End-to-end
distribution for a wormlike chain in arbitrary dimensions ” in
Phys. Rev. E, 77, 061803 (2008)
EF Koslover, and DJ Wales, “Geometry optimization for peptides
and proteins: Comparison of Cartesian and internal coordinates ” in
J. Chem. Phys., 127, 234105 (2007)
EF Koslover and DJ Wales, “Comparison of double-ended transition
state search methods ” in J. Chem. Phys., 127, 134102 (2007)
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